Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MA_4340Biotin synthesis BioY protein. (187 aa)    
Predicted Functional Partners:
ecfA
Membrane associated ATPase; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 0.994
MA_4342
Membrane associated ATPase; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).
 
 
 0.994
MA_4343
Cobalt transport family protein.
 
 0.994
cbiQ-3
Cobalt ABC transporter, permease protein.
 
 0.957
cbiQ-2
ABC transporter, permease protein.
 
 0.956
MA_1419
Cobalt transport protein.
 
 0.956
bpl
Biotin operon repressor/biotin-pyruvate carboxylase ligase.
 
   
 0.910
MA_4020
ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).
 
 
 
 0.888
MA_4019
Cobalt transport protein.
 
 
 0.768
MA_4022
Cobalt transport protein.
 
 
 0.766
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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