Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_4422moaA/nifB/pqqE family protein. (379 aa)    
Predicted Functional Partners:
MA_4420
UbiA prenyltransferase.
 
     0.905
MA_4421
Bacteriochlorophyll synthase 43 kDa subunit.
     
 0.886
tgt
Archaeosine tRNA-ribosyltransferase; Exchanges the guanine residue with 7-cyano-7-deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D-loop) of archaeal tRNAs; Belongs to the archaeosine tRNA-ribosyltransferase family.
  
    0.797
MA_4279
Coenzyme PQQ synthesis protein E.
 
     0.720
nirD
Heme d1 biosynthesis protein precursor NirD.
  
 0.510
nirH
Heme d1 biosynthesis protein NirH.
 
  
 0.482
MA_1590
Surface antigen gene.
 
  
 0.474
MA_4033
Surface antigen gene.
 
  
 0.467
MA_3122
Surface antigen gene.
 
  
 0.459
MA_1838
Cell surface protein.
 
  
 0.447
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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