STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA_4428Conserved hypothetical protein. (285 aa)    
Predicted Functional Partners:
serB
Phosphoserine phosphatase.
    
 0.899
tgt-2
Archaeosine tRNA-ribosyltransferase.
 
   
 0.779
MA_0591
Conserved hypothetical protein.
 
     0.753
MA_3019
Conserved hypothetical protein.
 
     0.748
MA_1736
Mov34 family protein.
  
     0.747
MA_3018
Conserved hypothetical protein.
  
     0.747
MA_3524
Conserved hypothetical protein.
 
     0.746
rpl44e
Ribosomal protein L44e; Binds to the 23S rRNA.
  
     0.734
MA_1103
Integral membrane protein.
  
     0.728
MA_0818
Conserved hypothetical protein.
 
     0.722
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.