Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MA_4464dTDP-glucose 4,6-dehydratase. (298 aa)    
Predicted Functional Partners:
rps3
Ribosomal protein S3p; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
 
 0.916
rps10
Ribosomal protein S10p; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
 
 0.909
rps12
Ribosomal protein S12p; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
 
 0.909
rps19
Ribosomal protein S19p; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
  
 0.908
rps3ae
Ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
  
 0.904
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
 
 0.900
rps28e
Ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family.
   
 0.900
rps14
Ribosomal protein S14p; Binds 16S rRNA, required for the assembly of 30S particles.
  
 0.894
rfbA-2
Glucose-1-phosphate thymidylyltransferase.
 
 
 0.894
rps24e
Ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 0.893
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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