Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_4469Conserved hypothetical protein. (278 aa)    
Predicted Functional Partners:
MA_1162
Conserved hypothetical protein.
 
    0.827
MA_3285
Conserved hypothetical protein.
  
    0.790
MA_4580
Conserved hypothetical protein.
       0.755
MA_4466
CAAX amino terminal protease family protein.
 
    0.680
MA_3108
Glutathione-regulated potassium-efflux system protein.
  
    0.653
kefC
Glutathione-regulated potassium-efflux system protein.
  
    0.653
MA_4468
Predicted protein.
       0.651
MA_1069
Conserved hypothetical protein.
 
    0.611
MA_3910
Conserved hypothetical protein.
  
    0.574
MA_1324
Conserved hypothetical protein.
   
    0.489
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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