rps17e protein (Methanosarcina acetivorans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rps17e

Ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family. (64 aa)

Predicted Functional Partners:

rpl18e

0.999

rps9

0.999

rps2

0.999

rps27e

0.999

rpl44e

0.999

rps15

0.999

rpl3

0.999

rpl23

0.999

rpl2

0.999

rps19

0.999

Your Current Organism:

Methanosarcina acetivorans

NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpl18e	rpl2	MA_0595	MA_1075	Ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.	Ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.998
rpl18e	rpl23	MA_0595	MA_1074	Ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.	Ribosomal protein L23p; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family.	0.998
rpl18e	rpl3	MA_0595	MA_1072	Ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.	Ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.999
rpl18e	rpl44e	MA_0595	MA_0646	Ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.	Ribosomal protein L44e; Binds to the 23S rRNA.	0.999
rpl18e	rps15	MA_0595	MA_0949	Ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.	Ribosomal protein S15p.	0.997
rpl18e	rps17e	MA_0595	MA_4472	Ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.	Ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family.	0.999
rpl18e	rps19	MA_0595	MA_1076	Ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.	Ribosomal protein S19p; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.997
rpl18e	rps2	MA_0595	MA_0600	Ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.	Ribosomal protein S2p; Belongs to the universal ribosomal protein uS2 family.	0.999
rpl18e	rps27e	MA_0595	MA_0645	Ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.	Ribosomal protein S27e.	0.999
rpl18e	rps9	MA_0595	MA_0597	Ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.	Ribosomal protein S9p; Belongs to the universal ribosomal protein uS9 family.	0.999
rpl2	rpl18e	MA_1075	MA_0595	Ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.	0.998
rpl2	rpl23	MA_1075	MA_1074	Ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein L23p; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family.	0.999
rpl2	rpl3	MA_1075	MA_1072	Ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.999
rpl2	rpl44e	MA_1075	MA_0646	Ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein L44e; Binds to the 23S rRNA.	0.999
rpl2	rps15	MA_1075	MA_0949	Ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein S15p.	0.999
rpl2	rps17e	MA_1075	MA_4472	Ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family.	0.999
rpl2	rps19	MA_1075	MA_1076	Ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein S19p; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999
rpl2	rps2	MA_1075	MA_0600	Ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein S2p; Belongs to the universal ribosomal protein uS2 family.	0.999
rpl2	rps27e	MA_1075	MA_0645	Ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein S27e.	0.993
rpl2	rps9	MA_1075	MA_0597	Ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein S9p; Belongs to the universal ribosomal protein uS9 family.	0.999