STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA_4506Na-K-Cl cotransporter. (758 aa)    
Predicted Functional Partners:
MA_1641
Alpha-amylase family protein.
  
 0.892
MA_3020
Conserved hypothetical protein.
 
 
 
 0.505
MA_4507
DNA helicase RecQ.
   
 
 0.478
MA_0491
Bacterial extracellular solute-binding family 3 protein.
 
 
 0.466
trpF
Phosphoribosylanthranilate isomerase; Belongs to the TrpF family.
   
 
 0.419
MA_3892
Hypothetical protein (multi-domain).
 
 
 0.419
truB
rRNA pseudouridine synthase; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily.
   
 
 0.413
MA_2218
Potassium channel protein.
 
   
 0.413
MA_2301
Hypothetical protein; Contains leucine-rich tandem repeats.
 
 
 0.412
MA_2309
Hypothetical protein (multi-domain).
 
 
 0.409
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.