MA_4535 protein (Methanosarcina acetivorans)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

MA_4535

Conserved hypothetical protein. (168 aa)

Predicted Functional Partners:

MA_4534

0.931

MA_4536

0.887

MA_1204

0.866

MA_4532

0.666

MA_4533

0.628

rps5

0.564

fpoB

0.519

MA_1200

0.505

fpoD

0.505

MA_2309

0.470

Your Current Organism:

Methanosarcina acetivorans

NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MA_1200	MA_4532	MA_1200	MA_4532	Iron ABC transporter, solute-binding protein.	Iron compounds ABC transporter, ATP-binding protein.	0.728
MA_1200	MA_4533	MA_1200	MA_4533	Iron ABC transporter, solute-binding protein.	Iron compounds ABC transporter, permease protein.	0.560
MA_1200	MA_4535	MA_1200	MA_4535	Iron ABC transporter, solute-binding protein.	Conserved hypothetical protein.	0.505
MA_1204	MA_4535	MA_1204	MA_4535	Hypothetical protein (multi-domain).	Conserved hypothetical protein.	0.866
MA_2309	MA_4535	MA_2309	MA_4535	Hypothetical protein (multi-domain).	Conserved hypothetical protein.	0.470
MA_4532	MA_1200	MA_4532	MA_1200	Iron compounds ABC transporter, ATP-binding protein.	Iron ABC transporter, solute-binding protein.	0.728
MA_4532	MA_4533	MA_4532	MA_4533	Iron compounds ABC transporter, ATP-binding protein.	Iron compounds ABC transporter, permease protein.	0.951
MA_4532	MA_4534	MA_4532	MA_4534	Iron compounds ABC transporter, ATP-binding protein.	Hypothetical protein (multi-domain).	0.841
MA_4532	MA_4535	MA_4532	MA_4535	Iron compounds ABC transporter, ATP-binding protein.	Conserved hypothetical protein.	0.666
MA_4532	MA_4536	MA_4532	MA_4536	Iron compounds ABC transporter, ATP-binding protein.	ABC transporter, solute-binding protein.	0.854
MA_4533	MA_1200	MA_4533	MA_1200	Iron compounds ABC transporter, permease protein.	Iron ABC transporter, solute-binding protein.	0.560
MA_4533	MA_4532	MA_4533	MA_4532	Iron compounds ABC transporter, permease protein.	Iron compounds ABC transporter, ATP-binding protein.	0.951
MA_4533	MA_4534	MA_4533	MA_4534	Iron compounds ABC transporter, permease protein.	Hypothetical protein (multi-domain).	0.830
MA_4533	MA_4535	MA_4533	MA_4535	Iron compounds ABC transporter, permease protein.	Conserved hypothetical protein.	0.628
MA_4533	MA_4536	MA_4533	MA_4536	Iron compounds ABC transporter, permease protein.	ABC transporter, solute-binding protein.	0.777
MA_4534	MA_4532	MA_4534	MA_4532	Hypothetical protein (multi-domain).	Iron compounds ABC transporter, ATP-binding protein.	0.841
MA_4534	MA_4533	MA_4534	MA_4533	Hypothetical protein (multi-domain).	Iron compounds ABC transporter, permease protein.	0.830
MA_4534	MA_4535	MA_4534	MA_4535	Hypothetical protein (multi-domain).	Conserved hypothetical protein.	0.931
MA_4534	MA_4536	MA_4534	MA_4536	Hypothetical protein (multi-domain).	ABC transporter, solute-binding protein.	0.649
MA_4535	MA_1200	MA_4535	MA_1200	Conserved hypothetical protein.	Iron ABC transporter, solute-binding protein.	0.505