Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_4573Conserved hypothetical protein. (165 aa)    
Predicted Functional Partners:
MA_4574
Hsp20/alpha crystallin family protein; Belongs to the small heat shock protein (HSP20) family.
 
  
 
0.968
hspA
Small heat shock protein; Belongs to the small heat shock protein (HSP20) family.
    
 0.919
MA_3589
Small heat shock protein, class I; Belongs to the small heat shock protein (HSP20) family.
    
 0.919
cdc48-2
Cell division control protein 48.
 
 
 0.733
MA_4576
Hth5 family protein.
 
   
 0.698
prp1
Phosphate regulatory protein-like protein.
 
   
 0.645
MA_2346
Conserved hypothetical protein.
 
   
 0.642
MA_3104
Conserved hypothetical protein.
 
   
 0.640
MA_0866
Conserved hypothetical protein.
 
   
 0.624
MA_0088
DnaJ protein.
  
 
 0.617
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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