Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cdc48-2Cell division control protein 48. (753 aa)    
Predicted Functional Partners:
MA_1813
Hypothetical protein.
  
  
 
0.903
cdc48
Cell division control protein 48 AAA family protein.
  
  
 
0.903
MA_4576
Hth5 family protein.
     
 0.828
ssrA
Site-specific recombinase.
     
 0.785
ssrA-2
Site-specific recombinase.
     
 0.785
MA_4574
Hsp20/alpha crystallin family protein; Belongs to the small heat shock protein (HSP20) family.
 
 
 0.756
MA_4573
Conserved hypothetical protein.
 
 
 0.733
MA_2888
Histone deacetylase.
   
 0.698
psmA
Multicatalytic endopeptidase complex, subunit alpha; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
 
 0.642
rpl40e
Ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
  
 0.637
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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