Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MA_1377 | MA_4595 | MA_1377 | MA_4595 | Chorismate mutase. | Prephenate dehydrogenase. | 0.980 |
MA_1377 | aroA | MA_1377 | MA_4544 | Chorismate mutase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.933 |
MA_1377 | aroB | MA_1377 | MA_4592 | Chorismate mutase. | Conserved hypothetical protein; Catalyzes the oxidative deamination and cyclization of 2- amino-3,7-dideoxy-D-threo-hept-6-ulosonic acid (ADH) to yield 3- dehydroquinate (DHQ), which is fed into the canonical shikimic pathway of aromatic amino acid biosynthesis; Belongs to the archaeal-type DHQ synthase family. | 0.804 |
MA_1377 | aroC | MA_1377 | MA_0550 | Chorismate mutase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.991 |
MA_1377 | aroD | MA_1377 | MA_4593 | Chorismate mutase. | 3-dehydroquinate dehydratase; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family. | 0.610 |
MA_1377 | aroE | MA_1377 | MA_4594 | Chorismate mutase. | Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.610 |
MA_1377 | hisC | MA_1377 | MA_0118 | Chorismate mutase. | Histidinol-phosphate aminotransferase. | 0.491 |
MA_1377 | pheA | MA_1377 | MA_3150 | Chorismate mutase. | Chorismate mutase/prephenate dehydratase. | 0.972 |
MA_1385 | MA_4595 | MA_1385 | MA_4595 | Aspartate aminotransferase. | Prephenate dehydrogenase. | 0.920 |
MA_1385 | aspB | MA_1385 | MA_1819 | Aspartate aminotransferase. | Aspartate aminotransferase. | 0.905 |
MA_1385 | hisC | MA_1385 | MA_0118 | Aspartate aminotransferase. | Histidinol-phosphate aminotransferase. | 0.936 |
MA_1385 | pheA | MA_1385 | MA_3150 | Aspartate aminotransferase. | Chorismate mutase/prephenate dehydratase. | 0.959 |
MA_4595 | MA_1377 | MA_4595 | MA_1377 | Prephenate dehydrogenase. | Chorismate mutase. | 0.980 |
MA_4595 | MA_1385 | MA_4595 | MA_1385 | Prephenate dehydrogenase. | Aspartate aminotransferase. | 0.920 |
MA_4595 | aroA | MA_4595 | MA_4544 | Prephenate dehydrogenase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.718 |
MA_4595 | aroB | MA_4595 | MA_4592 | Prephenate dehydrogenase. | Conserved hypothetical protein; Catalyzes the oxidative deamination and cyclization of 2- amino-3,7-dideoxy-D-threo-hept-6-ulosonic acid (ADH) to yield 3- dehydroquinate (DHQ), which is fed into the canonical shikimic pathway of aromatic amino acid biosynthesis; Belongs to the archaeal-type DHQ synthase family. | 0.705 |
MA_4595 | aroC | MA_4595 | MA_0550 | Prephenate dehydrogenase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.782 |
MA_4595 | aroD | MA_4595 | MA_4593 | Prephenate dehydrogenase. | 3-dehydroquinate dehydratase; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family. | 0.908 |
MA_4595 | aroE | MA_4595 | MA_4594 | Prephenate dehydrogenase. | Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.912 |
MA_4595 | aspB | MA_4595 | MA_1819 | Prephenate dehydrogenase. | Aspartate aminotransferase. | 0.920 |
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