STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppF-6Oligopeptide ABC transporter, ATP-binding protein. (275 aa)    
Predicted Functional Partners:
oppC-7
Oligopeptide ABC transporter, permease protein.
 
 0.911
oppD-7
Oligopeptide ABC transporter, ATP-binding protein.
 
   
0.872
oppB-8
Oligopeptide ABC transporter, permease protein.
 
  
 0.854
oppA-7
Oligopeptide ABC transporter, solute-binding protein.
  
 
 0.788
fwdE-2
Formylmethanofuran dehydrogenase, subunit E.
       0.739
MA_2480
Peptide ABC transporter, permease protein.
 
 0.675
oppC-2
Oligopeptide ABC transporter, permease protein.
 
 0.646
oppC-3
Oligopeptide ABC transporter, permease.
 
 0.623
oppC
Oligopeptide ABC transporter, permease protein.
 
 0.600
MA_3463
ABC transporter, permease protein.
 
 0.589
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.