Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
OOQ54780.1Gluconate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (491 aa)    
Predicted Functional Partners:
OOQ48454.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.959
OOQ55040.1
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.952
OOQ51090.1
Trehalose phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.952
OOQ51261.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.920
OOQ47554.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.920
OOQ48013.1
Trehalose 6-phosphate phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.874
OOQ47105.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.864
OOQ52583.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.860
OOQ49601.1
Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
    0.840
OOQ46749.1
Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
    0.840
Your Current Organism:
Streptomyces antibioticus
NCBI taxonomy Id: 1890
Other names: ATCC 23879, ATCC 8663, Actinomyces antibioticus, BCRC 12164, CBS 478.48, CBS 659.68, CCM 3159, CCRC 12164, CCRC:12164, CECT 3225, DSM 40234, IFO 12838, IMET 40227, ISP 5234, JCM 4620, KCTC 9688, LMG 5966, LMG:5966, NBRC 12838, NCIMB 8504, NRRL B-2770, NRRL-ISP 5234, S. antibioticus, Streptomyces antibioticus subsp. antibioticus, VKM Ac-964
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