STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOQ55009.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (863 aa)    
Predicted Functional Partners:
OOQ46849.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.892
OOQ46852.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.892
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.871
OOQ55221.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.858
htpX
Heat-shock protein HtpX; Metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M48B family.
     
 0.858
OOQ51981.1
Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.858
OOQ49076.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.858
htpX-2
Metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M48B family.
     
 0.858
OOQ49213.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.858
OOQ49665.1
Peptidase, M48 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.858
Your Current Organism:
Streptomyces antibioticus
NCBI taxonomy Id: 1890
Other names: ATCC 23879, ATCC 8663, Actinomyces antibioticus, BCRC 12164, CBS 478.48, CBS 659.68, CCM 3159, CCRC 12164, CCRC:12164, CECT 3225, DSM 40234, IFO 12838, IMET 40227, ISP 5234, JCM 4620, KCTC 9688, LMG 5966, LMG:5966, NBRC 12838, NCIMB 8504, NRRL B-2770, NRRL-ISP 5234, S. antibioticus, Streptomyces antibioticus subsp. antibioticus, VKM Ac-964
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.