Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOQ55298.1Carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (575 aa)    
Predicted Functional Partners:
OOQ55297.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.875
OOQ55299.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.874
OOQ55295.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.860
OOQ55296.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.829
OOQ55107.1
Acetyl xylan esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.759
OOQ55469.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.693
OOQ55300.1
Topology modulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.673
OOQ47329.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.649
OOQ55304.1
Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.621
OOQ55301.1
Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.587
Your Current Organism:
Streptomyces antibioticus
NCBI taxonomy Id: 1890
Other names: ATCC 23879, ATCC 8663, Actinomyces antibioticus, BCRC 12164, CBS 478.48, CBS 659.68, CCM 3159, CCRC 12164, CCRC:12164, CECT 3225, DSM 40234, IFO 12838, IMET 40227, ISP 5234, JCM 4620, KCTC 9688, LMG 5966, LMG:5966, NBRC 12838, NCIMB 8504, NRRL B-2770, NRRL-ISP 5234, S. antibioticus, Streptomyces antibioticus subsp. antibioticus, VKM Ac-964
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