STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_07683Coiled-coil domain-containing protein. (305 aa)    
Predicted Functional Partners:
PROFUN_08808
Pre-mRNA-processing factor 19-like.
    
   0.980
PROFUN_01940
U5 small nuclear ribonucleoprotein component-like protein.
    
   0.958
PROFUN_06131
Uncharacterized protein.
    
   0.958
PROFUN_02242
Pre-mRNA-processing factor 17-like.
    
   0.846
PROFUN_01266
WD repeat-containing protein 25-like.
    
   0.846
PROFUN_11743
Uridine-cytidine kinase; Belongs to the uridine kinase family.
   
   0.522
PROFUN_05449
Uridine-cytidine kinase; Belongs to the uridine kinase family.
   
   0.522
PROFUN_02232
Uracil phosphoribosyltransferase.
   
   0.522
PROFUN_09584
Rtf2 domain-containing protein.
      
 0.520
PROFUN_16621
Elongation factor 2-like.
    
   0.467
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.