STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_02548AAA domain-containing protein; Belongs to the AAA ATPase family. (441 aa)    
Predicted Functional Partners:
PROFUN_02847
Vacuolar protein sorting-associated protein VTA1-like protein.
   
 0.970
PROFUN_10934
Snf7-family protein.
   
 0.969
PROFUN_03541
Uncharacterized protein.
    
 0.933
PROFUN_03573
Uncharacterized protein.
   
 0.928
PROFUN_08275
Uncharacterized protein.
   
 0.920
PROFUN_08135
SNF7 family protein.
    
 0.859
PROFUN_12964
SNF7 family protein.
    
 0.859
PROFUN_08982
Charged multivesicular body protein 6-B.
    
 0.859
PROFUN_04769
Uncharacterized protein.
    
 0.859
PROFUN_07702
SNF7 family protein.
   
 0.850
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.