STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_14692Putative nonsense-mediated mRNA decay protein. (1193 aa)    
Predicted Functional Partners:
PROFUN_06880
Uncharacterized protein.
   
 0.963
PROFUN_04007
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.949
PROFUN_13184
Elongation factor tu.
    
 0.824
PROFUN_16168
Smg4_UPF3 domain-containing protein.
    
 0.816
PROFUN_13642
Smg4_UPF3 domain-containing protein.
    
 0.816
PROFUN_05946
RNA-binding protein 8A.
    
 0.787
PROFUN_01129
Nuclear cap-binding protein subunit 2.
   
 0.775
PROFUN_07352
Uncharacterized protein.
    
 0.767
PROFUN_07436
Polyadenylate-binding protein 2-like.
    
 0.734
PROFUN_13258
PINc domain-containing protein.
   
 0.718
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.