STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_15041Epidermal retinol dehydrogenase 2-like; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (297 aa)    
Predicted Functional Partners:
PROFUN_08826
Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.
    
 0.664
PROFUN_02870
WD_REPEATS_REGION domain-containing protein.
    
 0.664
PROFUN_09848
F-box domain-containing protein.
    
 0.661
PROFUN_08092
Histone chaperone asf-1.
    
 0.661
PROFUN_07830
Uncharacterized protein.
   
 0.655
PROFUN_04806
Uncharacterized protein.
  
 
 0.646
PROFUN_05563
2Fe-2S ferredoxin-type domain-containing protein.
   
 0.577
PROFUN_11295
Bifunctional dihydrofolate reductase-thymidylate synthase.
   
 
 0.558
PROFUN_08303
Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2.
     
 0.540
PROFUN_06769
3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   
 0.539
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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