STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_00436Exon junction complex protein. (161 aa)    
Predicted Functional Partners:
PROFUN_05946
RNA-binding protein 8A.
    
 0.998
PROFUN_00947
Uncharacterized protein.
    
 
 0.993
PROFUN_02549
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
    
 
 0.651
PROFUN_09274
Uncharacterized protein.
   
  
 0.528
PROFUN_16168
Smg4_UPF3 domain-containing protein.
    
 
 0.439
PROFUN_13642
Smg4_UPF3 domain-containing protein.
    
 
 0.439
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.