STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_14104UPF0171 family protein. (768 aa)    
Predicted Functional Partners:
PROFUN_07522
Uncharacterized protein.
    
 0.973
PROFUN_05133
Uncharacterized protein.
    
 0.969
PROFUN_03301
WD_REPEATS_REGION domain-containing protein.
    
 0.959
PROFUN_11833
Uncharacterized protein.
    
 0.950
PROFUN_01329
WD repeat-containing protein mio-like.
    
 0.942
NTH1
Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family.
    
 0.941
PROFUN_07409
Ras-related GTP-binding protein.
    
 0.937
PROFUN_08395
Uncharacterized protein.
    
 0.929
PROFUN_09981
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
    
 0.906
PROFUN_07965
WD repeat-containing protein 59-like.
    
 0.905
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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