STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_13353Uncharacterized protein; Belongs to the DEAD box helicase family. (602 aa)    
Predicted Functional Partners:
PROFUN_08010
Ribosome biogenesis protein bop1-like.
   
 0.891
PROFUN_07645
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.884
PROFUN_12476
CP-type G domain-containing protein.
   
 0.871
PROFUN_13638
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
 0.864
PROFUN_08063
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
   
 0.849
PROFUN_09208
Uncharacterized protein.
   
 0.846
PROFUN_10773
MKI67 FHA domain-interacting nucleolar phosphoprotein.
   
 
 0.832
PROFUN_08050
Nucleolar complex protein 2.
   
 
 0.827
PROFUN_02437
Putative nucleolar GTP-binding protein 1-like.
   
 
 0.826
PROFUN_15287
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.824
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.