STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_00980Putative DNA repair protein RAD5. (990 aa)    
Predicted Functional Partners:
PROFUN_03258
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.728
PROFUN_08345
RuvB-like helicase; Belongs to the RuvB family.
    
 0.725
PROFUN_12481
Uncharacterized protein; Belongs to the actin family.
    
 0.700
PROFUN_10399
Uncharacterized protein.
   
 0.675
PROFUN_12190
YL1_C domain-containing protein.
    
 0.666
PROFUN_10334
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.666
PROFUN_03379
Uncharacterized protein.
  
0.654
PROFUN_05532
Uncharacterized protein.
  
0.653
PROFUN_13565
Actin-like protein 6A.
   
 0.648
PROFUN_13566
ANK_REP_REGION domain-containing protein; Belongs to the actin family.
   
 0.648
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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