STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_00990WD repeat, SAM and U-box domain-containing protein 1-like. (499 aa)    
Predicted Functional Partners:
PROFUN_00354
Uncharacterized protein.
    
 0.999
PROFUN_09130
Tetratricopeptide repeat protein 37-like.
    
 0.817
PROFUN_13990
Uncharacterized protein.
    
 0.801
PROFUN_08752
Uncharacterized protein.
    
 0.757
PROFUN_04846
Paf1 complex protein.
   
 0.735
PROFUN_14470
TPR_REGION domain-containing protein.
    
 0.722
PROFUN_13617
Cytochrome c; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
   
 0.697
PROFUN_07191
CPSF_A domain-containing protein.
    
 0.655
PROFUN_07995
Ubiquitin-protein ligase, Cullin 4; Belongs to the cullin family.
    
  0.613
PROFUN_08233
Uncharacterized protein.
   
 0.611
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.