STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_13235Lysine--tRNA ligase. (631 aa)    
Predicted Functional Partners:
PROFUN_06734
Putative methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.998
PROFUN_08032
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.913
PROFUN_04033
Glutamine-tRNA ligase.
  
 0.910
PROFUN_03418
Prolyl-tRNA synthetase.
  
 0.899
PROFUN_01777
Lysine--tRNA ligase.
  
  
 
0.898
PROFUN_14651
Arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.894
PROFUN_07577
Peptide chain release factor I.
  
 
 0.858
PROFUN_14839
Glutamate-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.857
PROFUN_06255
tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.844
PROFUN_13447
Prolyl-tRNA synthetase.
  
 0.843
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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