STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_12439General transcription factor IIH subunit. (384 aa)    
Predicted Functional Partners:
PROFUN_02602
BSD domain-containing protein.
    
 0.998
PROFUN_11553
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
   
 0.998
PROFUN_14732
Putative CDK-activating kinase assembly factor MAT1.
   
 0.998
PROFUN_04737
Uncharacterized protein.
   
 0.998
PROFUN_02140
Helicase ATP-binding domain-containing protein.
    
 0.998
PROFUN_10219
Transcription factor IIE.
   
 0.997
PROFUN_06692
Transcription initiation factor IIE2.
   
 0.997
PROFUN_02646
Transcription factor IIH subunit.
    
 0.997
PROFUN_10453
Uncharacterized protein.
   
 0.986
PROFUN_07387
SAP domain-containing protein.
    
 0.975
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.