STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_12466tRNA pseudouridine synthase. (269 aa)    
Predicted Functional Partners:
PROFUN_04077
Putative 50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.743
PROFUN_10171
PUA domain-containing protein.
   
 0.733
PROFUN_03961
Putative tRNA pseudouridine synthase 1 isoform 1.
   
 0.733
PROFUN_00929
tRNA pseudouridine synthase B.
   
 0.733
PROFUN_10213
S-adenosyl-methyltransferase MraW.
   
 
 0.704
PROFUN_05203
Anthranilate synthase component 2.
     
 0.651
PROFUN_10075
Tryptophane synthase.
     
 0.647
PROFUN_11641
RNA polymerase II core subunit.
  
  
 0.643
PROFUN_05036
RPOLD domain-containing protein.
  
  
 0.643
PROFUN_06792
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.623
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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