STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_11881Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (475 aa)    
Predicted Functional Partners:
PROFUN_02757
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
 
 
 0.991
PROFUN_14183
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
 
 
 0.984
PROFUN_10266
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
 
 
 0.984
PROFUN_11413
Coproporphyrinogen III oxidase.
  
 
 0.960
PROFUN_10414
Ornithine aminotransferase.
  
 
 0.858
PROFUN_05403
VWFA domain-containing protein.
   
 
 0.800
PROFUN_08303
Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2.
   
 
 0.792
PROFUN_06354
Uroporphyrinogen-III synthase.
  
 
 0.780
PROFUN_07579
DNA photolyase FAD-binding protein.
     
 0.758
PROFUN_01456
DAO domain-containing protein.
    
  0.704
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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