STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_10447Uncharacterized protein. (4084 aa)    
Predicted Functional Partners:
PROFUN_07830
Uncharacterized protein.
    
 0.716
PROFUN_09604
TROVE domain-containing protein.
    
 0.698
PROFUN_05594
Uncharacterized protein.
    
 0.647
PROFUN_10073
Uncharacterized protein.
    
 0.604
PROFUN_07822
Copper/zinc superoxide dismutase-like.
     
 0.563
PROFUN_12847
TFIID_20kDa domain-containing protein.
    
 0.561
PROFUN_12295
FAT domain-containing protein.
    
  0.555
PROFUN_00025
Ubiquitin.
    
 0.551
PROFUN_01327
Uncharacterized protein.
    
  0.546
PROFUN_08788
Transcription initiation factor TFIID subunit 10.
    
  0.541
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.