STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_10442Ribosomal RNA large subunit methyltransferase E. (270 aa)    
Predicted Functional Partners:
PROFUN_03624
Nucleolar protein 58.
   
 0.893
PROFUN_08010
Ribosome biogenesis protein bop1-like.
   
 
 0.887
PROFUN_07645
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
   0.887
PROFUN_02437
Putative nucleolar GTP-binding protein 1-like.
   
 
 0.870
PROFUN_08050
Nucleolar complex protein 2.
   
 
 0.857
PROFUN_12785
Ribosome biogenesis protein.
   
 
 0.854
PROFUN_00863
Ribosomal protein L24-like protein.
   
 
 0.854
PROFUN_13823
Mitochondrial GTPase 1.
   
 
 0.849
PROFUN_09208
Uncharacterized protein.
   
 
 0.844
PROFUN_10773
MKI67 FHA domain-interacting nucleolar phosphoprotein.
   
 
 0.840
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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