STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_10006RRM domain-containing protein. (441 aa)    
Predicted Functional Partners:
PROFUN_13360
Uncharacterized protein.
    
 0.810
PROFUN_04651
Uncharacterized protein.
    
 0.810
PROFUN_01129
Nuclear cap-binding protein subunit 2.
    
 0.651
PROFUN_04592
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.648
PROFUN_10519
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.641
PROFUN_05800
Small nuclear ribonucleoprotein G.
   
 0.640
PROFUN_04557
Sm domain-containing protein.
   
 0.627
PROFUN_07379
Splicing factor 3B subunit 1.
   
 0.625
PROFUN_15720
Uncharacterized protein.
    
 0.619
PROFUN_10975
Uncharacterized protein.
    
 0.619
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.