STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_09181ATP-dependent RNA helicase SUPV3L1, mitochondrial-like. (414 aa)    
Predicted Functional Partners:
PROFUN_07644
Uncharacterized protein; Belongs to the RNR ribonuclease family.
   
 
 0.648
PROFUN_06421
RNB domain-containing protein.
   
 
 0.648
PROFUN_03398
DIS3-like exonuclease 1-like; Belongs to the RNR ribonuclease family.
   
 
 0.648
PROFUN_03281
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.
   
 
 0.648
PROFUN_06590
Probable methyltransferase BMT2 homolog; Probable S-adenosyl-L-methionine-dependent methyltransferase.
   
 
 0.521
PROFUN_05847
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.
   
 
 0.434
PROFUN_13392
Uncharacterized protein.
   
 
 0.413
PROFUN_05871
Lactamase_B domain-containing protein.
   
  
 0.413
PROFUN_04838
Zinc phosphodiesterase ELAC protein 2 isoform 1.
   
  
 0.413
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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