STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_09274Uncharacterized protein. (372 aa)    
Predicted Functional Partners:
PROFUN_06817
Pre-mRNA-processing-splicing factor 8-like.
    
 
 0.994
PROFUN_01940
U5 small nuclear ribonucleoprotein component-like protein.
    
 
 0.955
PROFUN_00043
Protein SGT1-like.
    
 
 0.918
PROFUN_15872
GYF domain-containing protein.
   
 
 0.821
PROFUN_16434
Translocation protein.
    
 
 0.797
PROFUN_15054
Translocation protein.
    
 
 0.797
PROFUN_09595
Uncharacterized protein.
    
 
 0.791
PROFUN_15487
E2F-associated phosphoprotein.
    
 
 0.750
PROFUN_14727
Pre-mRNA-splicing helicase BRR2.
    
 
 0.720
PROFUN_10328
HIT-type domain-containing protein.
    
 
 0.712
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.