STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_07569Choline/carnitine O-acetyltransferase. (736 aa)    
Predicted Functional Partners:
PROFUN_01557
Putative glycerophosphocholine phosphodiesterase Gde1.
     
 0.909
PROFUN_01417
Acyl-CoA dehydrogenase.
   
 0.889
PROFUN_11471
Uncharacterized protein.
     
 0.855
PROFUN_01571
Mitochondrial isovaleryl-CoA dehydrogenase.
   
 0.817
PROFUN_05870
Malate synthase.
   
  
 0.775
PROFUN_10549
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.
  
0.746
PROFUN_08962
Carn_acyltransf domain-containing protein.
  
0.741
PROFUN_16351
Acyl-CoA dehydrogenase.
   
 0.701
PROFUN_10162
Cytochrome b5 heme-binding domain-containing protein.
   
 0.701
PROFUN_00224
Cytochrome b5 heme-binding domain-containing protein.
   
 0.701
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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