STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_06768Putative ubiquitin protein ligase; Belongs to the ubiquitin-conjugating enzyme family. (166 aa)    
Predicted Functional Partners:
PROFUN_00025
Ubiquitin.
    
 0.941
PROFUN_05008
Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.
    
0.904
PROFUN_04127
Ubiquitin-like domain-containing protein.
   
 0.894
PROFUN_04626
Ribosomal protein L40.
   
 0.894
PROFUN_15050
Ubiquitin-conjugating enzyme.
    
0.867
PROFUN_04356
Uncharacterized protein.
   
 0.858
PROFUN_01222
E3 ubiquitin-protein ligase RBX1.
   
 0.858
PROFUN_10334
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.847
PROFUN_08666
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
  
  
 
0.829
PROFUN_06549
Ubiquitin-conjugating enzyme E2, J1 (Predicted).
     
0.825
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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