STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_03051RNA-binding region RNP-1 domain-containing protein. (503 aa)    
Predicted Functional Partners:
PROFUN_03945
Uncharacterized protein.
   
 0.658
PROFUN_13786
Putative RNA-binding protein cabeza.
   
  0.652
PROFUN_01129
Nuclear cap-binding protein subunit 2.
    
  0.638
PROFUN_06685
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
   0.624
PROFUN_04429
Uncharacterized protein.
   
 0.605
PROFUN_01234
SAP domain-containing protein.
   
 0.581
PROFUN_03618
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
  0.530
PROFUN_03566
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
   0.524
PROFUN_00584
40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
   
   0.520
PROFUN_11995
KH type-2 domain-containing protein.
   
 
 0.515
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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