STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_05132Ras-related protein Rab-11B-like isoform 2. (239 aa)    
Predicted Functional Partners:
PROFUN_09603
SH3 domain-containing protein.
    
 0.805
PROFUN_09108
GTP-binding protein ypt3.
  
  
 
0.765
PROFUN_01301
U-box domain-containing protein.
  
  
 
0.765
PROFUN_01008
Uncharacterized protein.
  
  
 
0.763
PROFUN_12158
Rab11A, RAB family GTPase.
  
  
 
0.762
PROFUN_05209
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.761
PROFUN_10296
Ras-related protein Rab-11B.
  
  
 
0.751
PROFUN_06261
Uncharacterized protein.
    
 0.722
PROFUN_05594
Uncharacterized protein.
   
 0.721
PROFUN_11720
Sec2p domain-containing protein.
    
 0.697
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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