STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_04008DEAD/DEAH box helicase. (1376 aa)    
Predicted Functional Partners:
PROFUN_09603
SH3 domain-containing protein.
    
  0.992
PROFUN_07421
AP-2 medium chain; Belongs to the adaptor complexes medium subunit family.
    
 0.906
PROFUN_03004
Alpha-tubulin N-acetyltransferase; Specifically acetylates 'Lys-40' in alpha-tubulin on the lumenal side of microtubules. Promotes microtubule destabilization and accelerates microtubule dynamics; this activity may be independent of acetylation activity. Acetylates alpha-tubulin with a slow enzymatic rate, due to a catalytic site that is not optimized for acetyl transfer. Enters the microtubule through each end and diffuses quickly throughout the lumen of microtubules. Acetylates only long/old microtubules because of its slow acetylation rate since it does not have time to act on dynam [...]
    
 0.827
PROFUN_12585
AP complex subunit beta.
    
 0.782
PROFUN_10828
AP complex subunit beta; Belongs to the adaptor complexes large subunit family.
    
 0.782
PROFUN_13601
Methyltransferase-like protein, related.
    
  0.768
PROFUN_13445
DH domain-containing protein.
    
  0.768
PROFUN_00962
Cortactin.
    
  0.768
PROFUN_11686
Uncharacterized protein.
    
  0.768
PROFUN_11202
DH domain-containing protein.
    
  0.768
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.