STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROFUN_03365F-box domain-containing protein. (553 aa)    
Predicted Functional Partners:
PROFUN_00025
Ubiquitin.
   
  0.716
PROFUN_10208
BRCT domain-containing protein.
    
 0.642
PROFUN_04127
Ubiquitin-like domain-containing protein.
    
 0.629
PROFUN_04626
Ribosomal protein L40.
    
 0.629
PROFUN_10334
UBIQUITIN_CONJUGAT_2 domain-containing protein.
     
 0.598
PROFUN_14728
E2_bind domain-containing protein.
    
 0.579
PROFUN_11959
Ubiquitin-conjugating enzyme E2 M; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.555
PROFUN_09890
Uncharacterized protein.
     
 0.522
PROFUN_15631
Cullin C; Belongs to the cullin family.
    
 0.516
PROFUN_10668
Adenylate/guanylate cyclase; Belongs to the cullin family.
    
 0.516
Your Current Organism:
Planoprotostelium fungivorum
NCBI taxonomy Id: 1890364
Other names: P. fungivorum, Planoprotostelium fungivorum Hillmann, Ferling, Novohradska & Gloeckner 2017, Protostelium sp. Jena Gg-2016a
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