STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMH32380.1Purine-cytosine permease; Belongs to the purine-cytosine permease (2.A.39) family. (482 aa)    
Predicted Functional Partners:
SMH32379.1
Nicotinamidase-related amidase.
 
     0.952
SMH32378.1
Fructokinase.
       0.619
SMH32416.1
Hypothetical protein.
       0.605
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
   
    0.545
SMH32418.1
Glutamate carboxypeptidase.
       0.535
SMH32372.1
PhnB protein.
       0.443
SMH48660.1
Hypothetical protein.
  
     0.434
carB
Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.
   
    0.422
carA
Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family.
   
    0.412
Your Current Organism:
Rathayibacter oskolensis
NCBI taxonomy Id: 1891671
Other names: LMG 22542, LMG:22542, R. oskolensis, Rathayibacter oskolensis Dorofeeva et al. 2018, Rathayibacter sp. VKM Ac-2121, VKM Ac-2121, strain DL-329
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.