STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARJ43947.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)    
Predicted Functional Partners:
ARJ43946.1
NAD(P)H dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.878
ARJ43482.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.673
ARJ43935.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.599
ARJ43922.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.537
ARJ43297.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.531
ARJ43295.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.526
ARJ40931.1
Sir2 family NAD-dependent protein deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.524
ARJ43307.1
Phage tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.474
ARJ43296.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.439
ARJ43313.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.438
Your Current Organism:
Pantoea alhagi
NCBI taxonomy Id: 1891675
Other names: P. alhagi, Pantoea sp. LTYR-11Z, strain LTYR-11Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.