STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cus16_0823Beta-mannosidase; 6 probable transmembrane helices predicted by TMHMM; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds and carbohydrate metabolic process. (844 aa)    
Predicted Functional Partners:
Cus16_0822
Peptide ABC transporter substrate-binding protein; Signal peptide predicted by Phobius with cleavage site between residues 30 and 31; 6 probable transmembrane helices predicted by TMHMM; Protein involved in transmembrane transport.
 
     0.705
Cus16_1531
Hypothetical protein; 2 probable transmembrane helices predicted by TMHMM; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds and carbohydrate metabolic process.
  
  
 
0.655
Cus16_0817
Hypothetical protein; 3 probable transmembrane helices predicted by TMHMM; Protein involved in alpha-galactosidase activity, catalytic activity and carbohydrate metabolic process.
 
  
  0.623
Cus16_0821
Peptide ABC transporter permease; 6 probable transmembrane helices predicted by Phobius; 6 probable transmembrane helices predicted by TMHMM; Protein involved in transport.
 
     0.623
Cus16_0820
ABC transporter permease; 6 probable transmembrane helices predicted by Phobius; 6 probable transmembrane helices predicted by TMHMM; Protein involved in transport.
 
     0.608
Cus16_0825
Beta-galactosidase; 6 probable transmembrane helices predicted by TMHMM; Protein involved in beta-galactosidase activity, carbohydrate metabolic process and galactose metabolic process.
  
 
  0.597
Cus16_0819
ABC transporter ATP-binding protein; 6 probable transmembrane helices predicted by TMHMM; Protein involved in ATP binding, ATPase activity, nucleotide binding and peptide transport; Belongs to the ABC transporter superfamily.
 
     0.562
Cus16_0818
Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein; 3 probable transmembrane helices predicted by TMHMM; Protein involved in ATP binding, ATPase activity, nucleotide binding and peptide transport; Belongs to the ABC transporter superfamily.
 
     0.547
Cus16_1792
Hypothetical protein; 1 probable transmembrane helix predicted by Phobius; 1 probable transmembrane helix predicted by TMHMM; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate metabolic process and cellulose catabolic process; Belongs to the glycosyl hydrolase family 6.
 
 
  0.525
Cus16_2229
beta-N-acetylhexosaminidase; 3 probable transmembrane helices predicted by TMHMM; Protein involved in beta-N-acetylhexosaminidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds and carbohydrate metabolic process.
 
  0.484
Your Current Organism:
Curtobacterium sp. ER16
NCBI taxonomy Id: 1891920
Other names: C. sp. ER1/6, Curtobacterium sp. ER1/6
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