STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fixL_1Sensor protein FixL. (505 aa)    
Predicted Functional Partners:
tdiR_1
Transcriptional regulatory protein TdiR.
 
  
 0.936
fixL_2
Sensor protein FixL.
  
 
0.933
tdiR_2
Transcriptional regulatory protein TdiR.
 
  
 0.927
barA_5
Signal transduction histidine-protein kinase BarA.
 
 
 0.902
divJ
Histidine protein kinase DivJ.
 
 0.864
barA_2
Signal transduction histidine-protein kinase BarA.
 
 
 0.851
barA_6
Signal transduction histidine-protein kinase BarA.
 
 
 0.820
barA_7
Signal transduction histidine-protein kinase BarA.
 
 
 0.807
pleD_4
Stalked cell differentiation-controlling protein.
 
 
 0.805
cheY
Chemotaxis protein CheY.
 
 
 
 0.804
Your Current Organism:
Fuerstia marisgermanicae
NCBI taxonomy Id: 1891926
Other names: DSM 27554, F. marisgermanicae, LMG 27831, LMG:27831, Planctomycetes bacterium NH11, strain NH11
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