STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
miaB_1(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB. (458 aa)    
Predicted Functional Partners:
crtF
Demethylspheroidene O-methyltransferase.
 
    0.822
APZ91654.1
Coproporphyrinogen III oxidase.
 
    
0.807
rebM
Demethylrebeccamycin-D-glucose O-methyltransferase.
  
    0.774
rebH_1
Flavin-dependent tryptophan halogenase RebH.
       0.773
APZ91650.1
Uridine/cytidine kinase.
       0.773
APZ91652.1
Hypothetical protein.
       0.773
APZ93228.1
Bacteriocin maturation radical SAM protein 1.
  
     0.724
rebH_2
Flavin-dependent tryptophan halogenase RebH.
  
    0.690
APZ92838.1
Heme NO binding protein.
  
  
 0.682
APZ92020.1
Hopanoid biosynthesis associated radical SAM protein HpnJ.
  
     0.663
Your Current Organism:
Fuerstia marisgermanicae
NCBI taxonomy Id: 1891926
Other names: DSM 27554, F. marisgermanicae, LMG 27831, LMG:27831, Planctomycetes bacterium NH11, strain NH11
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.