STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
omcB_1Cysteine-rich outer membrane protein. (709 aa)    
Predicted Functional Partners:
APZ96800.1
Phage assembly protein; Belongs to the bacterial secretin family.
  
    0.727
rpsF
Hypothetical protein; Binds together with S18 to 16S ribosomal RNA.
  
   0.724
APZ94452.1
Shikimate 5-dehydrogenase.
  
     0.709
xynC
Endo-1,4-beta-xylanase C precursor.
  
     0.679
APZ97049.1
Bacteriophage N4 adsorption protein B.
  
 
   0.668
rpoA_1
DNA-directed RNA polymerase subunit alpha.
 
 
 
 0.665
APZ92845.1
Putative permease.
  
     0.657
secG
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family.
  
     0.647
APZ92363.1
Hypothetical protein; YTV.
  
     0.642
APZ96689.1
Flagellin N-methylase.
  
     0.617
Your Current Organism:
Fuerstia marisgermanicae
NCBI taxonomy Id: 1891926
Other names: DSM 27554, F. marisgermanicae, LMG 27831, LMG:27831, Planctomycetes bacterium NH11, strain NH11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.