STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sigM_1RNA polymerase sigma factor SigM; Belongs to the sigma-70 factor family. ECF subfamily. (234 aa)    
Predicted Functional Partners:
APZ92956.1
Hypothetical protein.
 
     0.667
APZ92957.1
Hypothetical protein.
 
     0.601
APZ92958.1
EF hand.
       0.550
APZ92959.1
ATP-dependent protease.
       0.550
sigV_1
RNA polymerase sigma factor SigV; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.505
APZ92963.1
Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit.
 
     0.493
APZ92962.1
Hypothetical protein.
 
     0.490
sigW_4
Sigma-W factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.487
APZ92961.1
Hypothetical protein; N-terminal double-transmembrane domain.
 
     0.464
sigW_9
Sigma-W factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.460
Your Current Organism:
Fuerstia marisgermanicae
NCBI taxonomy Id: 1891926
Other names: DSM 27554, F. marisgermanicae, LMG 27831, LMG:27831, Planctomycetes bacterium NH11, strain NH11
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