STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ95640.1Outer membrane efflux protein. (553 aa)    
Predicted Functional Partners:
APZ95639.1
Type I secretion membrane fusion protein, HlyD family.
   0.925
msbA_2
Lipid A export ATP-binding/permease protein MsbA.
 
  
 0.910
APZ96425.1
Efflux transporter, RND family, MFP subunit.
  
   0.691
APZ92902.1
Efflux transporter, RND family, MFP subunit.
  
   0.688
APZ90706.1
Hypothetical protein.
  
     0.632
APZ91070.1
Hypothetical protein.
  
   
 0.619
APZ91687.1
Vitamin K-dependent gamma-carboxylase.
  
     0.578
APZ96097.1
Hypothetical protein.
  
     0.566
APZ95613.1
Fatty acid desaturase.
  
     0.536
dauA
Dicarboxylic acid uptake system A.
  
     0.531
Your Current Organism:
Fuerstia marisgermanicae
NCBI taxonomy Id: 1891926
Other names: DSM 27554, F. marisgermanicae, LMG 27831, LMG:27831, Planctomycetes bacterium NH11, strain NH11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.