STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ95854.1Conjugal transfer coupling protein. (560 aa)    
Predicted Functional Partners:
traG
Conjugal transfer protein TraG.
  
  
 
0.930
APZ95855.1
Hypothetical protein.
       0.773
traC_2
DNA primase TraC.
 
    0.750
traC_3
DNA primase TraC.
 
    0.750
traC_1
DNA primase TraC.
 
    0.743
traC_4
DNA primase TraC.
 
    0.736
traC_5
DNA primase TraC.
 
    0.735
traC_6
DNA primase TraC.
 
    0.733
APZ95856.1
Hypothetical protein.
       0.714
APZ95852.1
Putative protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain.
       0.661
Your Current Organism:
Fuerstia marisgermanicae
NCBI taxonomy Id: 1891926
Other names: DSM 27554, F. marisgermanicae, LMG 27831, LMG:27831, Planctomycetes bacterium NH11, strain NH11
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