STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exbDBiopolymer transport protein ExbD. (141 aa)    
Predicted Functional Partners:
APZ93061.1
Colicin uptake protein.
 
 
 0.861
exbB_3
Biopolymer transport protein ExbB.
 
 
 0.860
exbB_2
Biopolymer transport protein ExbB.
 
 
 0.857
exbB_1
Biopolymer transport protein ExbB.
 
 
 0.852
APZ91420.1
Biopolymer transport protein ExbB.
 
 
 0.850
APZ96142.1
Prenyltransferase and squalene oxidase repeat.
       0.789
APZ96771.1
NPCBM/NEW2 domain protein.
 
 
 0.758
lpxA
Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
     0.486
APZ96140.1
Transglutaminase-like superfamily protein.
       0.476
APZ91867.1
Hypothetical protein.
  
     0.463
Your Current Organism:
Fuerstia marisgermanicae
NCBI taxonomy Id: 1891926
Other names: DSM 27554, F. marisgermanicae, LMG 27831, LMG:27831, Planctomycetes bacterium NH11, strain NH11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.