STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fbpCFe(3+) ions import ATP-binding protein FbpC 2. (231 aa)    
Predicted Functional Partners:
idiA
Iron deficiency-induced protein A precursor.
 
  
  0.962
pknD_9
Serine/threonine-protein kinase PknD.
     0.939
APZ92637.1
Putative binding protein precursor.
  
  
 0.801
APZ96320.1
Hypothetical protein.
       0.773
artP
Arginine transport ATP-binding protein ArtP.
 
     0.749
APZ90433.1
Putative multidrug export ATP-binding/permease protein.
  
     0.703
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.667
APZ96316.1
ATPase involved in DNA repair.
 
     0.627
APZ96323.1
Putative membrane protein.
 
     0.626
cysS
Cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.585
Your Current Organism:
Fuerstia marisgermanicae
NCBI taxonomy Id: 1891926
Other names: DSM 27554, F. marisgermanicae, LMG 27831, LMG:27831, Planctomycetes bacterium NH11, strain NH11
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